Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB21858.1K+ transport system, NAD-binding component; PFAM: TrkA-N domain; Ion channel. (367 aa)    
Predicted Functional Partners:
AGB21859.1
Zn-finger containing NTP pyrophosphohydrolase; PFAM: NADH pyrophosphatase zinc ribbon domain; NUDIX domain; NADH pyrophosphatase-like rudimentary NUDIX domain.
       0.861
AGB21857.1
Putative membrane protein.
       0.760
AGB23165.1
tRNA/rRNA cytosine-C5-methylase; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.647
AGB23650.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.614
AGB21015.1
uroporphyrinogen-III synthase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD.
 
  
 0.574
AGB25461.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
  
 0.554
AGB25491.1
PFAM: Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, high GC gram positive type.
 
   
 0.541
AGB21129.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.533
AGB21855.1
DNA/RNA helicase, superfamily I; PFAM: Protein of unknown function (DUF2800); UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
  
 0.525
AGB21856.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
  
 0.525
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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