Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB21967.1PFAM: Domain of unknown function (DUF385); TIGRFAM: deazaflavin-dependent nitroreductase family protein. (129 aa)    
Predicted Functional Partners:
AGB26057.1
CarD-like transcriptional regulator; PFAM: CarD-like/TRCF domain; manually curated.
  
    0.675
AGB23368.1
PFAM: Polyketide cyclase / dehydrase and lipid transport.
 
 
 0.649
AGB21961.1
PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
  
 
 0.583
AGB21966.1
PFAM: homogentisate 1,2-dioxygenase.
       0.581
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
  
 0.570
AGB21962.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.554
AGB23773.1
Non-ribosomal peptide synthase; PFAM: Condensation domain.
  
     0.548
AGB23355.1
Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1.
  
  
 0.543
AGB21964.1
Putative acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
     
 0.538
AGB23498.1
PFAM: Putative esterase.
 
  
 0.519
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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