Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB22097.1PFAM: Bacterial regulatory proteins, tetR family. (197 aa)    
Predicted Functional Partners:
AGB25854.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.758
AGB25849.1
Hypothetical protein.
  
     0.753
AGB21416.1
PFAM: Bacterial regulatory proteins, tetR family; TIGRFAM: mycofactocin system transcriptional regulator.
  
  
 0.744
AGB20809.1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family.
  
  
 0.728
AGB25195.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.725
AGB23701.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.722
AGB26421.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.704
AGB25859.1
Hypothetical protein.
  
     0.678
AGB22098.1
PFAM: Cytochrome P450.
 
   
 0.675
AGB21934.1
PFAM: Bacterial regulatory proteins, tetR family.
   
    0.673
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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