rpmB protein (Mycobacterium sp. JS623) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Score

rpmB

PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)

Predicted Functional Partners:

rpsN

0.985

rpmG-2

0.978

rpsF

0.947

rpmF

0.938

rpsR

0.936

rplI

0.930

rplM

0.926

rpsT

0.926

rplU

0.926

rpsO

0.925

Your Current Organism:

Mycobacterium sp. JS623

NCBI taxonomy Id: 212767
Other names: M. sp. JS623

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplI	rplM	Mycsm_06466	Mycsm_01091	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.994
rplI	rplU	Mycsm_06466	Mycsm_04207	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplI	rpmB	Mycsm_06466	Mycsm_02039	LSU ribosomal protein L9P; Binds to the 23S rRNA.	PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.930
rplI	rpmF	Mycsm_06466	Mycsm_05265	LSU ribosomal protein L9P; Binds to the 23S rRNA.	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.977
rplI	rpmG-2	Mycsm_06466	Mycsm_02040	LSU ribosomal protein L9P; Binds to the 23S rRNA.	PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.	0.919
rplI	rpsF	Mycsm_06466	Mycsm_06469	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.996
rplI	rpsN	Mycsm_06466	Mycsm_02041	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.941
rplI	rpsO	Mycsm_06466	Mycsm_02495	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.991
rplI	rpsR	Mycsm_06466	Mycsm_05856	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.978
rplI	rpsT	Mycsm_06466	Mycsm_04134	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.981
rplM	rplI	Mycsm_01091	Mycsm_06466	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L9P; Binds to the 23S rRNA.	0.994
rplM	rplU	Mycsm_01091	Mycsm_04207	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplM	rpmB	Mycsm_01091	Mycsm_02039	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.926
rplM	rpmF	Mycsm_01091	Mycsm_05265	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.987
rplM	rpmG-2	Mycsm_01091	Mycsm_02040	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family.	0.925
rplM	rpsF	Mycsm_01091	Mycsm_06469	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.989
rplM	rpsN	Mycsm_01091	Mycsm_02041	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.	0.979
rplM	rpsO	Mycsm_01091	Mycsm_02495	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplM	rpsR	Mycsm_01091	Mycsm_05856	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.964
rplM	rpsT	Mycsm_01091	Mycsm_04134	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.992