Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGB22574.1 | AGB22575.1 | Mycsm_02223 | Mycsm_02224 | PFAM: Domain of Unknown Function (DUF350). | Hypothetical protein. | 0.745 |
AGB22574.1 | AGB22576.1 | Mycsm_02223 | Mycsm_02225 | PFAM: Domain of Unknown Function (DUF350). | PFAM: Protein of unknown function DUF2617. | 0.913 |
AGB22574.1 | AGB22577.1 | Mycsm_02223 | Mycsm_02226 | PFAM: Domain of Unknown Function (DUF350). | Hypothetical protein. | 0.935 |
AGB22574.1 | AGB22578.1 | Mycsm_02223 | Mycsm_02227 | PFAM: Domain of Unknown Function (DUF350). | Hypothetical protein. | 0.477 |
AGB22574.1 | speE | Mycsm_02223 | Mycsm_02222 | PFAM: Domain of Unknown Function (DUF350). | Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.915 |
AGB22575.1 | AGB22574.1 | Mycsm_02224 | Mycsm_02223 | Hypothetical protein. | PFAM: Domain of Unknown Function (DUF350). | 0.745 |
AGB22575.1 | AGB22576.1 | Mycsm_02224 | Mycsm_02225 | Hypothetical protein. | PFAM: Protein of unknown function DUF2617. | 0.876 |
AGB22575.1 | AGB22577.1 | Mycsm_02224 | Mycsm_02226 | Hypothetical protein. | Hypothetical protein. | 0.876 |
AGB22575.1 | AGB22578.1 | Mycsm_02224 | Mycsm_02227 | Hypothetical protein. | Hypothetical protein. | 0.540 |
AGB22575.1 | speE | Mycsm_02224 | Mycsm_02222 | Hypothetical protein. | Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.745 |
AGB22576.1 | AGB22574.1 | Mycsm_02225 | Mycsm_02223 | PFAM: Protein of unknown function DUF2617. | PFAM: Domain of Unknown Function (DUF350). | 0.913 |
AGB22576.1 | AGB22575.1 | Mycsm_02225 | Mycsm_02224 | PFAM: Protein of unknown function DUF2617. | Hypothetical protein. | 0.876 |
AGB22576.1 | AGB22577.1 | Mycsm_02225 | Mycsm_02226 | PFAM: Protein of unknown function DUF2617. | Hypothetical protein. | 0.975 |
AGB22576.1 | AGB22578.1 | Mycsm_02225 | Mycsm_02227 | PFAM: Protein of unknown function DUF2617. | Hypothetical protein. | 0.540 |
AGB22576.1 | speE | Mycsm_02225 | Mycsm_02222 | PFAM: Protein of unknown function DUF2617. | Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.930 |
AGB22577.1 | AGB22574.1 | Mycsm_02226 | Mycsm_02223 | Hypothetical protein. | PFAM: Domain of Unknown Function (DUF350). | 0.935 |
AGB22577.1 | AGB22575.1 | Mycsm_02226 | Mycsm_02224 | Hypothetical protein. | Hypothetical protein. | 0.876 |
AGB22577.1 | AGB22576.1 | Mycsm_02226 | Mycsm_02225 | Hypothetical protein. | PFAM: Protein of unknown function DUF2617. | 0.975 |
AGB22577.1 | AGB22578.1 | Mycsm_02226 | Mycsm_02227 | Hypothetical protein. | Hypothetical protein. | 0.540 |
AGB22577.1 | speE | Mycsm_02226 | Mycsm_02222 | Hypothetical protein. | Putative spermidine synthase with an N-terminal membrane domain; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. | 0.935 |
page 1 of 2