Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB22753.1PFAM: Domain of unknown function (DUF385); TIGRFAM: deazaflavin-dependent nitroreductase family protein. (147 aa)    
Predicted Functional Partners:
AGB22754.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: NmrA-like family.
 
     0.795
AGB22583.1
Hypothetical protein.
 
     0.609
AGB22720.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.599
AGB22755.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.568
AGB23555.1
Hypothetical protein.
  
     0.509
AGB21990.1
PFAM: Nitroreductase family.
  
     0.486
AGB23411.1
TIGRFAM: PPOX class probable F420-dependent enzyme.
 
     0.469
AGB21027.1
PFAM: Domain of unknown function (DUF385).
 
     0.446
AGB23786.1
PFAM: Nitroreductase family.
  
     0.436
AGB21583.1
PFAM: Nitroreductase family.
  
     0.433
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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