Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB22883.1Hypothetical protein. (444 aa)    
Predicted Functional Partners:
AGB22887.1
Ni,Fe-hydrogenase I large subunit; PFAM: Nickel-dependent hydrogenase.
 
 0.989
AGB22888.1
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: hydrogenase (NiFe) small subunit (hydA).
 
 
 0.971
AGB22885.1
Hypothetical protein.
 
   
 0.968
AGB22884.1
Hypothetical protein.
 
     0.967
AGB22886.1
Thioredoxin-like protein; PFAM: NifU-like domain.
 
     0.950
AGB22880.1
PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF.
 
  
 0.900
AGB22881.1
PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; manually curated; non-canonical start codon.
 
     0.893
AGB22878.1
Hypothetical protein.
 
     0.873
AGB22877.1
PFAM: HupF/HypC family.
 
   
 0.839
AGB22873.1
PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD.
 
   
 0.774
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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