Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB22928.1Hypothetical protein. (260 aa)    
Predicted Functional Partners:
AGB22718.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.757
AGB23747.1
Putative ATPase; PFAM: Adenylate and Guanylate cyclase catalytic domain; Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal.
 
     0.742
AGB22720.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.734
AGB23078.1
PFAM: Bacterial regulatory proteins, tetR family; manually curated.
  
     0.727
AGB24791.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
     0.714
AGB24809.1
Hypothetical protein.
  
     0.695
AGB23965.1
Putative aminoglycoside phosphotransferase; PFAM: Domain of unknown function (DUF227).
  
     0.681
AGB24778.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.671
AGB24714.1
Hypothetical protein.
  
   
 0.670
AGB25163.1
PFAM: Protein of unknown function (DUF1214).
  
     0.656
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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