Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23022.1PFAM: Protein of unknown function (DUF3618). (99 aa)    
Predicted Functional Partners:
AGB23023.1
PFAM: Protein of unknown function (DUF1469).
 
   
 0.887
AGB21767.1
Beta-galactosidase; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.530
AGB20982.1
PFAM: Protein of unknown function (DUF2599).
  
 0.527
AGB23018.1
Hypothetical protein.
  
 0.527
AGB25644.1
PFAM: Protein of unknown function (DUF3071).
  
 0.527
AGB26343.1
PFAM: Cutinase.
  
 0.527
AGB26353.1
PFAM: GLTT repeat (6 copies).
  
 0.527
AGB23021.1
Peroxiredoxin; PFAM: AhpC/TSA family; Protein of unknown function (DUF742).
  
    0.501
AGB20930.1
Lactoylglutathione lyase-like lyase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
   
 0.491
AGB26495.1
Response regulator with putative antiterminator output domain; PFAM: ANTAR domain.
  
     0.482
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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