Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB23024.1Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain. (289 aa)    
Predicted Functional Partners:
AGB26101.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family.
 
  
 0.734
AGB26154.1
Membrane carboxypeptidase (penicillin-binding protein); PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; PASTA domain.
  
  
 0.721
AGB20487.1
Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain.
     
 0.684
AGB25877.1
Membrane carboxypeptidase (penicillin-binding protein); PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; PASTA domain.
  
  
 0.661
AGB22566.1
Methionine synthase II (cobalamin-independent); PFAM: Cobalamin-independent synthase, Catalytic domain.
  
     0.653
AGB26645.1
N-acetylmuramoyl-L-alanine amidase; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.610
AGB26368.1
PFAM: CAAX amino terminal protease family.
     
 0.574
AGB24660.1
Protein exported by TAT pathway; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Domain of unknown function (DUF1906); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
  
 0.540
AGB22648.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.495
AGB21613.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.479
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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