Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGB23214.1Transcriptional regulator; PFAM: Acetyltransferase (GNAT) family; MarR family. (288 aa)    
Predicted Functional Partners:
AGB23213.1
Hypothetical protein.
       0.701
AGB23216.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.695
AGB23215.1
Hypothetical protein.
       0.668
AGB23217.1
Hypothetical protein.
       0.668
AGB21534.1
PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ.
  
 0.655
AGB24438.1
Serine phosphatase RsbU, regulator of sigma subunit; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE).
  
 
 0.564
AGB26493.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Stage II sporulation protein E (SpoIIE); Phosphoserine phosphatase RsbU, N-terminal domain; PAS fold; TIGRFAM: PAS domain S-box.
  
 
 0.564
AGB23218.1
PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
  
  
 0.554
cysC
Sulfate adenylyltransferase subunit 1; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.541
AGB25595.1
PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit.
  
 
 0.536
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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