Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB23222.1PFAM: Bacterial regulatory proteins, tetR family. (189 aa)    
Predicted Functional Partners:
AGB23223.1
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
  
 0.883
AGB22864.1
Phage shock protein A (IM30), suppresses sigma54-dependent transcription; PFAM: PspA/IM30 family.
 
    0.734
AGB24144.1
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.714
AGB25491.1
PFAM: Chorismate mutase type II; TIGRFAM: monofunctional chorismate mutase, high GC gram positive type.
  
    0.713
AGB24461.1
Hypothetical protein.
  
     0.684
AGB23224.1
Hypothetical protein.
 
     0.648
AGB24516.1
Hypothetical protein.
  
     0.644
AGB23386.1
Hypothetical protein.
  
     0.641
AGB21852.1
TIGRFAM: TIGR02569 family protein.
  
     0.634
AGB24842.1
Glucitol operon activator.
  
     0.629
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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