Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB23416.1PFAM: Trm112p-like protein; Belongs to the UPF0434 family. (71 aa)    
Predicted Functional Partners:
AGB23414.1
Poly(3-hydroxyalkanoate) synthetase; PFAM: AMP-binding enzyme; alpha/beta hydrolase fold.
 
    0.841
AGB23415.1
Hypothetical protein.
       0.829
AGB25865.1
HIT family hydrolase, diadenosine tetraphosphate hydrolase; PFAM: HIT domain.
 
    0.777
AGB26343.1
PFAM: Cutinase.
  
    0.750
AGB22985.1
PFAM: Protein of unknown function (DUF2029).
  
     0.749
AGB23224.1
Hypothetical protein.
  
     0.726
AGB23413.1
ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter.
     
 0.720
AGB20972.1
PFAM: Acyl-ACP thioesterase.
  
     0.691
AGB26348.1
Hypothetical protein.
 
     0.654
AGB26335.1
PFAM: Mycobacterial cell wall arabinan synthesis protein.
  
    0.623
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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