Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB23460.1Transport protein; PFAM: MMPL family; TIGRFAM: Transport protein. (968 aa)    
Predicted Functional Partners:
AGB23461.1
PFAM: Mycobacterium membrane protein.
   
 
 0.845
AGB23459.1
PFAM: Protein of unknown function (DUF732).
       0.773
AGB23457.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
       0.762
AGB23458.1
PFAM: Protein of unknown function (DUF2782).
       0.762
AGB23291.1
PFAM: Domain of unknown function (DUF385); TIGRFAM: deazaflavin-dependent nitroreductase family protein.
  
     0.692
AGB24945.1
PFAM: ATP synthase I chain.
  
     0.687
AGB25501.1
Hypothetical protein.
  
     0.608
AGB20570.1
PFAM: Protein of unknown function (DUF2786).
  
     0.587
AGB23173.1
PFAM: Protein of unknown function (DUF1396).
  
     0.572
AGB20972.1
PFAM: Acyl-ACP thioesterase.
  
     0.568
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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