Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23529.1PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family. (315 aa)    
Predicted Functional Partners:
AGB23530.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
     0.857
AGB23532.1
Arabinose efflux permease family protein; PFAM: Sugar (and other) transporter; TIGRFAM: metabolite-proton symporter.
       0.788
AGB23531.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.773
AGB23527.1
Hypothetical protein.
       0.416
AGB23528.1
PFAM: von Willebrand factor type A domain.
       0.416
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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