Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23631.1Hypothetical protein. (677 aa)    
Predicted Functional Partners:
AGB20510.1
Hypothetical protein.
  
     0.769
AGB26546.1
Hypothetical protein.
 
   
 0.733
AGB21397.1
PFAM: Protein of unknown function (DUF3558).
  
     0.728
AGB21403.1
PFAM: Cutinase.
  
     0.718
AGB23211.1
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
   
    0.692
AGB20777.1
Hypothetical protein.
  
     0.631
AGB26485.1
Putative protease; PFAM: Subtilase family; Pro-kumamolisin, activation domain.
  
     0.622
AGB24750.1
PFAM: Bacterial regulatory proteins, tetR family; manually curated.
  
    0.619
AGB24009.1
Hypothetical protein.
 
     0.604
AGB25875.1
PFAM: HNH endonuclease.
 
     0.596
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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