Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23680.1PFAM: Domain of unknown function (DUF1918). (74 aa)    
Predicted Functional Partners:
AGB23112.1
Hypothetical protein.
 
     0.640
AGB21244.1
PFAM: Antibiotic biosynthesis monooxygenase.
 
     0.637
AGB23111.1
Hypothetical protein.
 
     0.637
AGB23681.1
PFAM: Putative esterase.
       0.537
AGB22916.1
ATP-grasp superfamily enzyme; PFAM: PAC2 family.
  
    0.499
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
    0.433
AGB25914.1
Ferredoxin; PFAM: Protein of unknown function (DUF1271).
 
     0.430
AGB24063.1
Uncharacterized protein (ATP-grasp superfamily); PFAM: PAC2 family.
   
    0.428
AGB21420.1
PFAM: FMN-dependent dehydrogenase; TIGRFAM: heme/flavin dehydrogenase, mycofactocin system.
  
    0.413
AGB22202.1
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase; PFAM: FMN-dependent dehydrogenase.
  
    0.413
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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