Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGB23701.1PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (244 aa)    
Predicted Functional Partners:
AGB23700.1
PFAM: Fatty acid hydroxylase superfamily.
 
     0.948
AGB22372.1
PFAM: Bacterial regulatory proteins, tetR family.
 
  
 0.765
AGB21934.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.760
AGB20702.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: transcriptional regulator, ArgP family.
  
  
 0.758
AGB25854.1
PFAM: Bacterial regulatory proteins, tetR family.
 
  
 0.744
AGB22508.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
  
  
 0.741
AGB20611.1
PFAM: Bacterial regulatory proteins, gntR family; UTRA domain.
  
  
 0.738
AGB26622.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
  
 0.731
AGB22097.1
PFAM: Bacterial regulatory proteins, tetR family.
 
  
 0.722
AGB21121.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family.
   
    0.713
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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