Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23711.1PFAM: Protein of unknown function (DUF2867). (196 aa)    
Predicted Functional Partners:
AGB23712.1
PFAM: Bacterial regulatory proteins, tetR family.
 
     0.876
AGB23710.1
PFAM: Protein of unknown function (DUF2867).
       0.780
AGB23217.1
Hypothetical protein.
  
     0.566
AGB24297.1
Hypothetical protein.
  
     0.536
AGB23073.1
PFAM: Transcriptional regulator PadR-like family.
  
     0.480
AGB21025.1
Hypothetical protein.
  
     0.469
AGB26452.1
PFAM: Bacterial regulatory proteins, tetR family.
 
     0.424
AGB23999.1
Transcriptional regulator; PFAM: MarR family.
  
     0.416
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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