Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23766.1PFAM: Bacterial regulatory proteins, tetR family. (188 aa)    
Predicted Functional Partners:
AGB23765.1
PFAM: NAD dependent epimerase/dehydratase family.
 
   
 0.864
AGB22048.1
PFAM: NAD dependent epimerase/dehydratase family.
 
   
 0.729
AGB20943.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.596
AGB22710.1
Transcriptional regulator; PFAM: MarR family.
  
   
 0.584
AGB22518.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.568
AGB23621.1
Hypothetical protein.
 
  
 0.514
AGB26421.1
PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.494
AGB20702.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: transcriptional regulator, ArgP family.
   
 
 0.489
AGB23764.1
Hypothetical protein.
       0.487
AGB23767.1
Transport protein; PFAM: MMPL family; TIGRFAM: X-X-X-Leu-X-X-Gly heptad repeats; Transport protein.
  
  
 0.471
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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