Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB23822.1PFAM: Polyketide cyclase / dehydrase and lipid transport. (142 aa)    
Predicted Functional Partners:
AGB25771.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2236).
  
     0.573
AGB21838.1
Hypothetical protein.
  
     0.571
AGB23395.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2236).
  
     0.542
AGB24440.1
Hypothetical protein.
  
     0.483
AGB22912.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.462
AGB22898.1
Hypothetical protein.
  
     0.437
AGB21086.1
PFAM: Domain of unknown function (DUF385); TIGRFAM: deazaflavin-dependent nitroreductase family protein.
  
     0.426
AGB20495.1
PFAM: Pyridoxamine 5'-phosphate oxidase; TIGRFAM: PPOX class probable F420-dependent enzyme.
  
     0.413
AGB25016.1
PFAM: Protein of unknown function (DUF3558).
  
     0.413
AGB21799.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.405
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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