Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB24286.1Hypothetical protein; PFAM: L,D-transpeptidase catalytic domain. (297 aa)    
Predicted Functional Partners:
AGB22566.1
Methionine synthase II (cobalamin-independent); PFAM: Cobalamin-independent synthase, Catalytic domain.
  
     0.630
AGB26645.1
N-acetylmuramoyl-L-alanine amidase; PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase.
 
  
 0.593
AGB24285.1
PFAM: Protein of unknown function (DUF732).
       0.574
AGB26101.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family.
 
  
 0.529
AGB21297.1
Hypothetical protein.
  
   
 0.499
AGB21613.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.476
AGB24660.1
Protein exported by TAT pathway; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Domain of unknown function (DUF1906); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
  
 0.472
AGB22648.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.468
AGB26139.1
Hypothetical protein.
 
  
 0.457
AGB25372.1
PFAM: Transglycosylase-like domain.
 
  
 0.445
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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