Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
AGB24293.1PFAM: Glycosyl transferase family 2. (485 aa)    
Predicted Functional Partners:
AGB24291.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
  
 0.805
AGB24292.1
Putative xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase.
  
  
 0.805
AGB24294.1
Hypothetical protein.
       0.773
AGB24438.1
Serine phosphatase RsbU, regulator of sigma subunit; PFAM: GAF domain; Stage II sporulation protein E (SpoIIE).
  
 
 0.712
AGB26493.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Stage II sporulation protein E (SpoIIE); Phosphoserine phosphatase RsbU, N-terminal domain; PAS fold; TIGRFAM: PAS domain S-box.
  
 
 0.712
AGB24295.1
Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
     
 0.687
AGB20778.1
Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.
  
 
 0.652
ilvD
PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; manually curated; Belongs to the IlvD/Edd family.
   
 0.622
AGB22004.1
Hypothetical protein.
  
 0.608
AGB23423.1
Hypothetical protein.
  
 0.608
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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