STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB24372.1PFAM: PemK-like protein. (195 aa)    
Predicted Functional Partners:
AGB25208.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
   
    0.732
AGB24370.1
Hypothetical protein.
       0.731
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
     
 0.676
AGB24369.1
Hypothetical protein.
       0.518
AGB24515.1
Beta-glucanase/beta-glucan synthetase; PFAM: Glycosyl hydrolases family 16.
  
    0.501
AGB20760.1
PFAM: Glycosyl hydrolases family 16.
  
    0.498
AGB26493.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Stage II sporulation protein E (SpoIIE); Phosphoserine phosphatase RsbU, N-terminal domain; PAS fold; TIGRFAM: PAS domain S-box.
 
  
 0.441
AGB25361.1
Protein with tetrapyrrole methyltransferase and pyrophosphatase domains; PFAM: MazG nucleotide pyrophosphohydrolase domain.
    
 0.416
AGB22039.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
  
    0.404
AGB23093.1
Putative transcriptional regulator; PFAM: HxlR-like helix-turn-helix.
  
    0.404
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.