Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB24414.1Esterase/lipase; PFAM: alpha/beta hydrolase fold. (311 aa)    
Predicted Functional Partners:
AGB24415.1
Hypothetical protein.
       0.861
AGB24416.1
PFAM: Stress responsive A/B Barrel Domain; manually curated.
       0.861
AGB24413.1
Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator.
  
    0.783
AGB24417.1
Hypothetical protein.
       0.773
AGB24409.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
   
 0.628
AGB26046.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
  
 0.624
AGB26047.1
Polyketide synthase family protein; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
  
 0.624
AGB26048.1
Polyketide synthase family protein; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
  
 0.624
AGB24412.1
Succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: FAD binding domain.
   
   0.609
AGB26045.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; Condensation domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: non-ribosomal peptide synthase domain TIGR01720.
  
 0.606
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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