Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB24675.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
AGB24676.1
Hypothetical protein.
 
     0.946
AGB24674.1
Putative esterase of the alpha-beta hydrolase superfamily; PFAM: Patatin-like phospholipase.
     
 0.779
AGB24673.1
4-diphosphocytidyl-2-methyl-D-erythritol synthase; PFAM: Uncharacterized protein family UPF0007.
       0.770
AGB20548.1
Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.
 
  
 0.757
AGB25809.1
Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.
 
  
 0.737
AGB22190.1
Hypothetical protein.
  
     0.734
AGB20553.1
PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.
 
   
 0.729
AGB24692.1
Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.
 
  
 0.723
AGB22319.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2133).
 
     0.713
AGB23017.1
PFAM: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain.
 
 0.712
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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