STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB24712.1Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase. (380 aa)    
Predicted Functional Partners:
AGB24714.1
Hypothetical protein.
 
   
 0.956
AGB24713.1
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain.
 
     0.953
AGB24711.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
 
    
0.874
AGB22473.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
  
     0.764
AGB24717.1
Ferredoxin.
 
     0.762
AGB23077.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
  
     0.759
AGB24687.1
PFAM: Bacterial regulatory proteins, tetR family.
 
     0.753
AGB25573.1
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE-like region.
 
    0.753
AGB24710.1
PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain.
 
  
  0.737
AGB24837.1
Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase.
  
     0.722
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.