Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB24734.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
AGB24733.1
Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase family.
       0.861
AGB24732.1
Transcriptional regulator; PFAM: MarR family.
       0.819
AGB24735.1
Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain.
       0.797
AGB24731.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
       0.796
AGB24730.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase; manually curated.
       0.794
AGB24727.1
PFAM: Taurine catabolism dioxygenase TauD, TfdA family.
       0.788
AGB24728.1
Hypothetical protein.
      
0.788
AGB24729.1
Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] domain.
       0.788
AGB24736.1
PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
       0.564
AGB24725.1
Ferredoxin; PFAM: Protein of unknown function (DUF1271).
       0.426
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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