Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGB24735.1Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain. (421 aa)    
Predicted Functional Partners:
AGB24731.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
 
 
 0.873
AGB24733.1
Amidohydrolase, imidazolonepropionase; PFAM: Amidohydrolase family.
 
   
 0.853
AGB24732.1
Transcriptional regulator; PFAM: MarR family.
 
   
 0.850
AGB22302.1
Small subunit of phenylpropionate dioxygenase; PFAM: Ring hydroxylating beta subunit.
 
 0.838
AGB22287.1
Small subunit of phenylpropionate dioxygenase; PFAM: Ring hydroxylating beta subunit.
 
 0.821
AGB22362.1
Small subunit of phenylpropionate dioxygenase; PFAM: Ring hydroxylating beta subunit.
 
 0.820
AGB24730.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase; manually curated.
 
  
 0.814
AGB24727.1
PFAM: Taurine catabolism dioxygenase TauD, TfdA family.
 
     0.813
AGB24734.1
Hypothetical protein.
       0.797
AGB21537.1
PFAM: Ring hydroxylating beta subunit.
  
 0.733
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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