Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB24810.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
AGB24809.1
Hypothetical protein.
 
    
0.886
AGB24808.1
Heme/copper-type cytochrome/quinol oxidase, subunit 3; PFAM: Cytochrome c oxidase subunit III.
 
     0.881
AGB24807.1
Hypothetical protein.
       0.840
AGB24778.1
PFAM: Bacterial regulatory proteins, tetR family.
  
     0.751
AGB24719.1
Hypothetical protein.
  
     0.746
AGB25163.1
PFAM: Protein of unknown function (DUF1214).
  
     0.740
AGB25579.1
PFAM: Bacterial regulatory proteins, tetR family; manually curated.
 
     0.730
AGB22464.1
Hypothetical protein.
  
     0.705
AGB23078.1
PFAM: Bacterial regulatory proteins, tetR family; manually curated.
  
     0.698
AGB24735.1
Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain.
  
     0.694
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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