AGB24900.1 protein (Mycobacterium sp. JS623)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AGB24900.1

Hypothetical protein. (152 aa)

Predicted Functional Partners:

AGB24899.1

0.945

AGB24901.1

0.864

AGB24906.1

0.845

AGB24903.1

0.844

AGB24904.1

0.840

AGB24902.1

0.837

AGB24905.1

0.826

AGB24897.1

0.817

AGB24898.1

0.817

AGB25710.1

0.781

Your Current Organism:

Mycobacterium sp. JS623

NCBI taxonomy Id: 212767
Other names: M. sp. JS623

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGB24897.1	AGB24898.1	Mycsm_04666	Mycsm_04667	Hypothetical protein.	PFAM: Protein of unknown function (DUF732).	0.777
AGB24897.1	AGB24899.1	Mycsm_04666	Mycsm_04668	Hypothetical protein.	Hypothetical protein.	0.867
AGB24897.1	AGB24900.1	Mycsm_04666	Mycsm_04669	Hypothetical protein.	Hypothetical protein.	0.817
AGB24897.1	AGB24901.1	Mycsm_04666	Mycsm_04670	Hypothetical protein.	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.444
AGB24897.1	AGB24902.1	Mycsm_04666	Mycsm_04671	Hypothetical protein.	Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.	0.434
AGB24897.1	AGB24903.1	Mycsm_04666	Mycsm_04672	Hypothetical protein.	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.434
AGB24897.1	AGB24904.1	Mycsm_04666	Mycsm_04673	Hypothetical protein.	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.440
AGB24897.1	AGB24905.1	Mycsm_04666	Mycsm_04674	Hypothetical protein.	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.418
AGB24897.1	AGB24906.1	Mycsm_04666	Mycsm_04675	Hypothetical protein.	Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.	0.420
AGB24898.1	AGB24897.1	Mycsm_04667	Mycsm_04666	PFAM: Protein of unknown function (DUF732).	Hypothetical protein.	0.777
AGB24898.1	AGB24899.1	Mycsm_04667	Mycsm_04668	PFAM: Protein of unknown function (DUF732).	Hypothetical protein.	0.866
AGB24898.1	AGB24900.1	Mycsm_04667	Mycsm_04669	PFAM: Protein of unknown function (DUF732).	Hypothetical protein.	0.817
AGB24898.1	AGB24901.1	Mycsm_04667	Mycsm_04670	PFAM: Protein of unknown function (DUF732).	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.694
AGB24898.1	AGB24902.1	Mycsm_04667	Mycsm_04671	PFAM: Protein of unknown function (DUF732).	Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.	0.604
AGB24898.1	AGB24903.1	Mycsm_04667	Mycsm_04672	PFAM: Protein of unknown function (DUF732).	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.511
AGB24898.1	AGB24904.1	Mycsm_04667	Mycsm_04673	PFAM: Protein of unknown function (DUF732).	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.507
AGB24898.1	AGB24905.1	Mycsm_04667	Mycsm_04674	PFAM: Protein of unknown function (DUF732).	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein.	0.506
AGB24898.1	AGB24906.1	Mycsm_04667	Mycsm_04675	PFAM: Protein of unknown function (DUF732).	Virulence factor Mce family protein; PFAM: Protein of unknown function (DUF3407); mce related protein; TIGRFAM: virulence factor Mce family protein.	0.516
AGB24898.1	AGB25710.1	Mycsm_04667	Mycsm_05523	PFAM: Protein of unknown function (DUF732).	PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein; manually curated.	0.484
AGB24899.1	AGB24897.1	Mycsm_04668	Mycsm_04666	Hypothetical protein.	Hypothetical protein.	0.867