Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AGB25080.1PFAM: O-methyltransferase. (244 aa)    
Predicted Functional Partners:
AGB25081.1
PFAM: Bacterial regulatory proteins, tetR family.
     
 0.800
AGB25079.1
RNA polymerase, sigma 29 subunit, SigE; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.711
AGB23434.1
PFAM: O-methyltransferase.
  
     0.679
AGB25083.1
Putative exporter of polyketide antibiotics.
     
 0.657
AGB26513.1
PFAM: O-methyltransferase.
  
     0.610
AGB25082.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
     
 0.559
AGB25085.1
Putative protein-S-isoprenylcysteine methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
     
 0.554
AGB25084.1
Putative protein-S-isoprenylcysteine methyltransferase; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
     
 0.553
tatB
Twin arginine-targeting protein translocase TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
     
 0.526
AGB26046.1
Polyketide synthase family protein; PFAM: Phosphopantetheine attachment site; Acyl transferase domain; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain.
   
 0.499
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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