Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB25113.1PFAM: D-alanyl-D-alanine carboxypeptidase. (211 aa)    
Predicted Functional Partners:
AGB20487.1
Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain.
    
 0.941
AGB24131.1
Cell division protein FtsI/penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain.
    
 0.941
AGB26101.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family.
    
 0.937
AGB21613.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.910
AGB22647.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.910
AGB22648.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.910
AGB25114.1
Hypothetical protein.
 
     0.799
AGB25115.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme.
       0.773
AGB25117.1
PFAM: Pyridoxamine 5'-phosphate oxidase.
 
     0.570
AGB25116.1
NTP pyrophosphohydrolase; PFAM: NUDIX domain.
       0.559
Your Current Organism:
Mycobacterium sp. JS623
NCBI taxonomy Id: 212767
Other names: M. sp. JS623
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