Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGB21374.1 | AGB25918.1 | Mycsm_00947 | Mycsm_05744 | Putative transcriptional regulator; PFAM: HTH domain. | DNA-binding domain-containing protein, AraC-type. | 0.467 |
| AGB21374.1 | rpoA | Mycsm_00947 | Mycsm_01079 | Putative transcriptional regulator; PFAM: HTH domain. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.484 |
| AGB21442.1 | AGB25918.1 | Mycsm_01016 | Mycsm_05744 | Transcriptional regulator; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, tetR family. | DNA-binding domain-containing protein, AraC-type. | 0.458 |
| AGB22292.1 | AGB25918.1 | Mycsm_01919 | Mycsm_05744 | Putative transcriptional regulator; PFAM: Helix-turn-helix. | DNA-binding domain-containing protein, AraC-type. | 0.472 |
| AGB23314.1 | AGB25918.1 | Mycsm_02991 | Mycsm_05744 | PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II. | DNA-binding domain-containing protein, AraC-type. | 0.479 |
| AGB23314.1 | AGB26400.1 | Mycsm_02991 | Mycsm_06247 | PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II. | PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II. | 0.999 |
| AGB24838.1 | AGB25918.1 | Mycsm_04604 | Mycsm_05744 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. | DNA-binding domain-containing protein, AraC-type. | 0.497 |
| AGB24858.1 | AGB25918.1 | Mycsm_04626 | Mycsm_05744 | Streptogramin lyase. | DNA-binding domain-containing protein, AraC-type. | 0.496 |
| AGB24858.1 | rpoA | Mycsm_04626 | Mycsm_01079 | Streptogramin lyase. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.528 |
| AGB25917.1 | AGB25918.1 | Mycsm_05743 | Mycsm_05744 | acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme. | DNA-binding domain-containing protein, AraC-type. | 0.510 |
| AGB25918.1 | AGB21374.1 | Mycsm_05744 | Mycsm_00947 | DNA-binding domain-containing protein, AraC-type. | Putative transcriptional regulator; PFAM: HTH domain. | 0.467 |
| AGB25918.1 | AGB21442.1 | Mycsm_05744 | Mycsm_01016 | DNA-binding domain-containing protein, AraC-type. | Transcriptional regulator; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, tetR family. | 0.458 |
| AGB25918.1 | AGB22292.1 | Mycsm_05744 | Mycsm_01919 | DNA-binding domain-containing protein, AraC-type. | Putative transcriptional regulator; PFAM: Helix-turn-helix. | 0.472 |
| AGB25918.1 | AGB23314.1 | Mycsm_05744 | Mycsm_02991 | DNA-binding domain-containing protein, AraC-type. | PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II. | 0.479 |
| AGB25918.1 | AGB24838.1 | Mycsm_05744 | Mycsm_04604 | DNA-binding domain-containing protein, AraC-type. | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. | 0.497 |
| AGB25918.1 | AGB24858.1 | Mycsm_05744 | Mycsm_04626 | DNA-binding domain-containing protein, AraC-type. | Streptogramin lyase. | 0.496 |
| AGB25918.1 | AGB25917.1 | Mycsm_05744 | Mycsm_05743 | DNA-binding domain-containing protein, AraC-type. | acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: AMP-binding enzyme. | 0.510 |
| AGB25918.1 | AGB25919.1 | Mycsm_05744 | Mycsm_05745 | DNA-binding domain-containing protein, AraC-type. | Hypothetical protein; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily. | 0.651 |
| AGB25918.1 | AGB26400.1 | Mycsm_05744 | Mycsm_06247 | DNA-binding domain-containing protein, AraC-type. | PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II. | 0.479 |
| AGB25918.1 | rpoA | Mycsm_05744 | Mycsm_01079 | DNA-binding domain-containing protein, AraC-type. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.564 |
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