Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APE74140.1 | hprK | SCITRI_00226 | SCITRI_00228 | Hypothetical protein. | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | 0.444 |
| APE74140.1 | lgt2 | SCITRI_00226 | SCITRI_00229 | Hypothetical protein. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. | 0.411 |
| APE74140.1 | trxB | SCITRI_00226 | SCITRI_00230 | Hypothetical protein. | Putative thioredoxin reductase. | 0.411 |
| APE74140.1 | uvrB | SCITRI_00226 | SCITRI_00227 | Hypothetical protein. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.524 |
| APE74148.1 | APE75036.1 | SCITRI_00234 | SCITRI_001154 | Amino acid permease. | ABC transporter permease. | 0.528 |
| APE74148.1 | lgt2 | SCITRI_00234 | SCITRI_00229 | Amino acid permease. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. | 0.445 |
| APE74148.1 | secA | SCITRI_00234 | SCITRI_00232 | Amino acid permease. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.451 |
| APE74148.1 | yvcL | SCITRI_00234 | SCITRI_00233 | Amino acid permease. | Hypothetical protein; Involved in cell division and chromosome segregation. | 0.587 |
| APE74612.1 | APE75036.1 | SCITRI_00718 | SCITRI_001154 | Hypothetical protein. | ABC transporter permease. | 0.699 |
| APE74612.1 | lgt2 | SCITRI_00718 | SCITRI_00229 | Hypothetical protein. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. | 0.568 |
| APE75036.1 | APE74148.1 | SCITRI_001154 | SCITRI_00234 | ABC transporter permease. | Amino acid permease. | 0.528 |
| APE75036.1 | APE74612.1 | SCITRI_001154 | SCITRI_00718 | ABC transporter permease. | Hypothetical protein. | 0.699 |
| APE75036.1 | lgt2 | SCITRI_001154 | SCITRI_00229 | ABC transporter permease. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. | 0.448 |
| hprK | APE74140.1 | SCITRI_00228 | SCITRI_00226 | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | Hypothetical protein. | 0.444 |
| hprK | lgt2 | SCITRI_00228 | SCITRI_00229 | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. | 0.801 |
| hprK | pgk | SCITRI_00228 | SCITRI_00231 | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.620 |
| hprK | secA | SCITRI_00228 | SCITRI_00232 | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. | 0.404 |
| hprK | trxB | SCITRI_00228 | SCITRI_00230 | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | Putative thioredoxin reductase. | 0.758 |
| hprK | uvrB | SCITRI_00228 | SCITRI_00227 | HPr kinase/phosphorylase; Belongs to the HPrK/P family. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.936 |
| lgt2 | APE74140.1 | SCITRI_00229 | SCITRI_00226 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins. | Hypothetical protein. | 0.411 |
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