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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnaBsChromosome replication initiation/membrane attachment protein. (415 aa)    
Predicted Functional Partners:
dnaI
Primosomal protein DnaI.
 
  
 0.902
ygaC
Uncharacterized protein associated with RNAses G and E.
  
     0.710
yneF
Hypothetical protein.
 
     0.535
nox2
NADH oxidase.
      
 0.531
APE74312.1
Putative NAD(FAD)-dependent dehydrogenase.
      
 0.531
nox3
NADH oxidase.
      
 0.531
uvrA
Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.529
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
   
  
 0.516
folC
Folylpolyglutamate synthase.
       0.465
APE74160.1
Hypothetical protein.
       0.465
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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