Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cbiQABC-type cobalt transport system permease protein. (323 aa)    
Predicted Functional Partners:
cbiO1
ABC-type cobalt transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
cbiO2
ABC-type cobalt transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
APE74160.1
Hypothetical protein.
  
 
 0.907
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.892
APE75379.1
Hypothetical protein.
 
 
 
 0.886
oppF
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.865
APE74233.1
Hypothetical protein.
      0.822
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
    0.765
APE75143.1
Hypothetical protein.
  
 
 0.760
APE74234.1
Hypothetical protein.
 
      0.681
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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