Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APE74327.1 | APE74328.1 | SCITRI_00422 | SCITRI_00423 | Hypothetical protein. | Hypothetical protein. | 0.546 |
APE74327.1 | cmk | SCITRI_00422 | SCITRI_00424 | Hypothetical protein. | Cytidylate kinase. | 0.623 |
APE74327.1 | engA | SCITRI_00422 | SCITRI_00425 | Hypothetical protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.558 |
APE74327.1 | gpsA | SCITRI_00422 | SCITRI_00426 | Hypothetical protein. | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.525 |
APE74328.1 | APE74327.1 | SCITRI_00423 | SCITRI_00422 | Hypothetical protein. | Hypothetical protein. | 0.546 |
APE74328.1 | cmk | SCITRI_00423 | SCITRI_00424 | Hypothetical protein. | Cytidylate kinase. | 0.861 |
APE74328.1 | engA | SCITRI_00423 | SCITRI_00425 | Hypothetical protein. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.727 |
APE74328.1 | gpsA | SCITRI_00423 | SCITRI_00426 | Hypothetical protein. | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.693 |
cmk | APE74327.1 | SCITRI_00424 | SCITRI_00422 | Cytidylate kinase. | Hypothetical protein. | 0.623 |
cmk | APE74328.1 | SCITRI_00424 | SCITRI_00423 | Cytidylate kinase. | Hypothetical protein. | 0.861 |
cmk | engA | SCITRI_00424 | SCITRI_00425 | Cytidylate kinase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.988 |
cmk | gpsA | SCITRI_00424 | SCITRI_00426 | Cytidylate kinase. | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.931 |
engA | APE74327.1 | SCITRI_00425 | SCITRI_00422 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Hypothetical protein. | 0.558 |
engA | APE74328.1 | SCITRI_00425 | SCITRI_00423 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Hypothetical protein. | 0.727 |
engA | cmk | SCITRI_00425 | SCITRI_00424 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.988 |
engA | gpsA | SCITRI_00425 | SCITRI_00426 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.969 |
gpsA | APE74327.1 | SCITRI_00426 | SCITRI_00422 | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | Hypothetical protein. | 0.525 |
gpsA | APE74328.1 | SCITRI_00426 | SCITRI_00423 | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | Hypothetical protein. | 0.693 |
gpsA | cmk | SCITRI_00426 | SCITRI_00424 | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | Cytidylate kinase. | 0.931 |
gpsA | engA | SCITRI_00426 | SCITRI_00425 | NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.969 |