rpmE protein (Spiroplasma citri) - STRING interaction network

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second shell of interactors

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Score

rpmE

50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (101 aa)

Predicted Functional Partners:

rpsO

0.971

rpmA

0.962

rpmF

0.954

rpsT

0.954

rpsP

0.954

rpmB

0.952

rplU

0.951

rpsR

0.950

rpsD

0.949

rpsI

0.949

Your Current Organism:

Spiroplasma citri

NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplU	rpmA	SCITRI_00505	SCITRI_00507	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.995
rplU	rpmB	SCITRI_00505	SCITRI_001569	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.974
rplU	rpmE	SCITRI_00505	SCITRI_0053	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.951
rplU	rpmF	SCITRI_00505	SCITRI_001149	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.979
rplU	rpsD	SCITRI_00505	SCITRI_001551	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.975
rplU	rpsI	SCITRI_00505	SCITRI_001838	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.964
rplU	rpsO	SCITRI_00505	SCITRI_001301	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.952
rplU	rpsP	SCITRI_00505	SCITRI_00375	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.957
rplU	rpsR	SCITRI_00505	SCITRI_0022	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.965
rplU	rpsT	SCITRI_00505	SCITRI_00204	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.973
rpmA	rplU	SCITRI_00507	SCITRI_00505	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.995
rpmA	rpmB	SCITRI_00507	SCITRI_001569	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.953
rpmA	rpmE	SCITRI_00507	SCITRI_0053	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.962
rpmA	rpmF	SCITRI_00507	SCITRI_001149	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.947
rpmA	rpsD	SCITRI_00507	SCITRI_001551	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.975
rpmA	rpsI	SCITRI_00507	SCITRI_001838	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.976
rpmA	rpsO	SCITRI_00507	SCITRI_001301	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.954
rpmA	rpsP	SCITRI_00507	SCITRI_00375	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.968
rpmA	rpsR	SCITRI_00507	SCITRI_0022	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.967
rpmA	rpsT	SCITRI_00507	SCITRI_00204	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.952