STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virD4Type IV secretion system protein VirD4. (721 aa)    
Predicted Functional Partners:
trsE
Transfer complex protein TrsE.
 
  
 0.955
APE74002.1
Putative membrane-bound ATPase.
 
  
 0.797
APE74444.1
Hypothetical protein.
       0.773
traE-2
Putative membrane-bound ATPase.
 
  
 0.698
APE74961.1
HNH endonuclease, putative.
   
 
 0.611
APE75065.1
HNH endonuclease, putative.
   
 
 0.611
APE75102.1
HNH endonuclease, putative.
   
 
 0.611
APE75166.1
Hypothetical protein.
   
 
 0.611
APE75488.1
HNH endonuclease, putative.
   
 
 0.611
APE74576.1
HNH endonuclease, putative.
   
 
 0.611
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.