Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virD4Type IV secretion system protein VirD4. (721 aa)    
Predicted Functional Partners:
trsE
Transfer complex protein TrsE.
 
  
 0.908
APE74002.1
Putative membrane-bound ATPase.
 
  
 0.802
APE74444.1
Hypothetical protein.
       0.773
traE-2
Putative membrane-bound ATPase.
 
  
 0.706
APE74443.1
Hypothetical protein.
       0.412
APE74961.1
HNH endonuclease, putative.
   
   0.405
APE75065.1
HNH endonuclease, putative.
   
   0.405
APE75102.1
HNH endonuclease, putative.
   
   0.405
APE75166.1
Hypothetical protein.
   
   0.405
APE75488.1
HNH endonuclease, putative.
   
   0.405
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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