Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trsETransfer complex protein TrsE. (888 aa)    
Predicted Functional Partners:
virD4
Type IV secretion system protein VirD4.
 
  
 0.908
APE75685.1
TraG family protein.
 
  
 0.799
APE74054.1
TraG family protein.
 
  
 0.798
APE74006.1
TraG family protein.
 
  
 0.798
APE74447.1
Hypothetical protein.
       0.732
APE74450.1
Hypothetical protein.
       0.483
APE74448.1
Hypothetical protein.
       0.449
APE74449.1
Hypothetical protein.
       0.449
APE74451.1
Hypothetical protein.
       0.404
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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