Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APE74570.1Bacteriophage portal protein. (400 aa)    
Predicted Functional Partners:
APE74569.1
Hypothetical protein.
   
 
 0.859
APE74567.1
Hypothetical protein.
  
   0.829
APE75106.1
Bacteriophage terminase-like protein, large subunit.
 
   
 0.784
APE74957.1
Bacteriophage terminase-like protein, large subunit.
 
   
 0.766
APE74573.1
Bacteriophage terminase-like protein, large subunit.
 
   
 0.734
APE75061.1
Bacteriophage terminase-like protein, large subunit.
 
   
 0.732
APE75492.1
Bacteriophage terminase-like protein, large subunit.
 
   
 0.732
APE74471.1
Bacteriophage terminase-like protein, large subunit.
 
   
 0.732
APE74568.1
Hypothetical protein.
       0.705
APE74565.1
Hypothetical protein.
       0.700
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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