STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppBOligopeptide ABC transporter permease. (414 aa)    
Predicted Functional Partners:
oppC
Oligopeptide ABC transporter permease.
 
 0.999
oppD
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.999
oppF
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.999
oppA
Oligopeptide ABC transporter substrate-binding protein.
 
 0.999
APE74599.1
Hypothetical protein.
       0.636
APE74593.1
Hypothetical protein.
       0.521
potC
Spermidine/putrescine ABC transporter permease.
  
  
 0.459
rnpA
Putative ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
      
 0.454
APE75465.1
PTS system, fructose-specific IIABC components.
     
 0.437
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
     
 0.400
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.