Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APE74668.1Hypothetical protein. (429 aa)    
Predicted Functional Partners:
APE74451.1
Hypothetical protein.
      
 0.514
APE75416.1
Putative lipoprotein.
      
 0.513
APE74545.1
Hypothetical protein.
      
 0.513
APE74665.1
Hypothetical protein.
       0.499
APE74666.1
Hypothetical protein.
       0.499
APE74667.1
Hypothetical protein.
       0.499
sc76-2
ABC-type transport system substrate-binding protein.
      
 0.482
APE74669.1
Hypothetical protein.
       0.447
Your Current Organism:
Spiroplasma citri
NCBI taxonomy Id: 2133
Other names: ATCC 27556, NCPPB 2647, S. citri
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