STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA73617.1Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (925 aa)    
Predicted Functional Partners:
AIA73618.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
AIA73619.1
Biotin carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.939
AIA74065.1
Agmatinase; Catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
 
  
 0.923
AIA73620.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.920
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.916
AIA73455.1
Arginine succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.908
AIA73456.1
Arginine N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.908
AIA75295.1
Arginine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.837
argH
Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.825
AIA73616.1
Succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
  
  
 0.721
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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