Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AIA74191.1RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
AIA74192.1
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.950
AIA75332.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.939
AIA74907.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.925
AIA75369.1
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.869
AIA73289.1
Agglutination protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.715
AIA74978.1
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.715
AIA75929.1
Kinesin K39; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.714
AIA73766.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.709
AIA74193.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.608
AIA73805.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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