Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AIA74197.1Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
AIA74997.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.923
AIA76122.1
Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.912
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
  
 
 0.905
AIA74205.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.790
AIA74198.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.767
AIA74840.1
Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.640
AIA74842.1
Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.626
AIA74332.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.622
AIA76813.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.622
AIA76819.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.591
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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