Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AIA75098.1Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
AIA75096.1
Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.997
AIA75097.1
Pilus assembly protein PilO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.996
AIA75099.1
Type II and III secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
AIA75095.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.984
AIA73860.1
Type IV pilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.856
AIA76514.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.837
AIA73851.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.803
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.802
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.797
AIA75023.1
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.772
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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