STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA75142.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUA5 family. (207 aa)    
Predicted Functional Partners:
AIA75141.1
Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.858
AIA75140.1
BolA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.711
AIA75139.1
FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.674
AIA76631.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.656
tsaD
UGMP family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.628
AIA73706.1
Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.606
AIA75143.1
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
trmB
tRNA (guanine-N7)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
 
  
 0.443
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
    0.435
rlmB
23S rRNA methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.
 
  
 0.434
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.