STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIA75406.1Outer membrane porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)    
Predicted Functional Partners:
AIA75407.1
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.790
AIA74121.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
AIA76272.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
malT
Transcriptional regulator; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto- oligosaccharides. Specifically binds to the promoter region of its target genes, recognizing a short DNA motif called the MalT box.
  
     0.614
AIA76186.1
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
AIA76450.1
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.543
AIA76270.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
AIA75405.1
PTS N-acetyl-D-glucosamine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
AIA75408.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.473
AIA75404.1
Phosphoenolpyruvate-protein phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.463
Your Current Organism:
Halomonas campaniensis
NCBI taxonomy Id: 213554
Other names: ATCC BAA-966, DSM 15293, H. campaniensis, Halomonas campaniae, Halomonas campaniensis Romano et al. 2005, Halomonas campisalis subsp. campaniae, strain 5AG
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